rs50896317 SNP Detail

Summary

• ID
  rs50896317
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:3399659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACC CAAAGACCTA AAGTCTGAGG
  G
  TTTTTTTTTA CCCATTAATT AATTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132926232	ENSMUSSNP7185341	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321724845	CHEV_6_3349659	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50896317					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:3399659 () rs orientation: forward

Symbol	Name	Function Class
Rr134883	regulatory region 134883	within coordinates
Rr146113	regulatory region 146113	58 bp distal
Rr146114	regulatory region 146114	141 bp proximal
Rr399551	regulatory region 399551	within coordinates
Samd9l	sterile alpha motif domain containing 9-like	201 bp upstream
Tssr59689	transcription start site region 59689	344 bp upstream
Tssr59690	transcription start site region 59690	195 bp upstream
Tssr59691	transcription start site region 59691	85 bp upstream