rs50896876 SNP Detail

Summary

• ID
  rs50896876
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70119360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAACAGCA GCTGCGTACT
  CAGTAATGAT GTCAGTGTTC ATTGCTACAT CTACGTCTTC TCCTACGGCC TTGCCAGGGA
  AGGCGGTTGC CGGGTATTTT GTACCTGTGG AATTTGGCAG CTTAAGCAAG GGAAGGCTTC
  TGTACAGCTG CGCTAATTGG AGCTGTGTGA ACCTGAGTGA AGATGGCTCG CGAGTGGCTA
  S
  GCCACGCCTT CAGCTTCCCT TGTTACCCCT TCATCCCCTG TTTCAGTGAA ATGCTCCGGG
  ACCCAAGGTT CCGCAGTGCA GGAACTCAAG GGCTATCGCC AGAGTTATCA GTAAGGGTAG
  AGAGCAAGCA CCTGCGAGCG TTTTTTTGGT GGCCACAGAT TCCCCTCTCG GCTTCTGGTG
  TGTCGTGAAG TCACGTTAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136604750	ENSMUSSNP4089104	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50896876					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70119360 () rs orientation: forward

Symbol	Name	Function Class
Gm26849	predicted gene, 26849	within coordinates
Gm68934	predicted gene, 68934	309 bp upstream
Myo1e	myosin IE	within coordinates
Tssr85881	transcription start site region 85881	1133 bp upstream
Tssr90403	transcription start site region 90403	334 bp upstream