rs50897783 SNP Detail

Summary

• ID
  rs50897783
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118569755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCAGAAGC AGAGACAGTG GTTTGTTCTT GCTTTCAAAT
  AGCCCCAGAT TTAGAACTCC CTGCAGTCAA ACCCAAACGG GGTTCTACAG GCTTTTGTGC
  G
  GGGGTGGGGT GGGGCGCACA CATACCACGT GGGTGCACAT ACGCACATAC TATGGACACA
  AGTGTGACAC AAAGATGCCC ATATTTCTTC TCTCTTGAA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss133584352	ENSMUSSNP6445440	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321925384	CHEV_6_118542812	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50897783					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118569755 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi17905	CpG island 17905			849 bp proximal
Rr637493	regulatory region 637493			711 bp proximal
Rr637494	regulatory region 637494			1130 bp proximal