rs50897859 SNP Detail

Summary

• ID
  rs50897859
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126776959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGAGAA TTCCTAAAAT
  AGGACACGAA AAAAGGAAAA ACTATACAAC AATAAAATCA AATTCACTTC ACCAAAATAA
  AAACCTCTGT TCTTTGGAAG ATATGTTTTT TAAATATTTA TTTGTGTGTG TACTTTCATA
  GACACCTACA TGAGCTTATG TCTACTATGT GTGTGCAGGT GTCTACAGAG ATCAAAAGAG
  K
  ACACCAGATC CCAGAACTGG AGTTCTAGGT AATTATTGAT TATAAGCAGC CATGTGGATG
  CTGGGTATTG ACCCCAGGTC CATCTCCTGA AGAGCAGCCA GTGCTCTTAA CCACTGAGCC
  ATCTCTCCAT CCCCTGGAAG ATATTCTTAA AGGAATAAAG ACCACTGTAG ACTGGGAGAA
  GACAATCATA AAGCATCTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147514402	ENSMUSSNP6073663	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320498590	CHEV_2_126760775	CHEVERUD	SCREENING_POP	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50897859					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126776959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	1635 bp distal
Gm75308	predicted gene, 75308	98 bp downstream
Rr373816	regulatory region 373816	1992 bp upstream
Rr564422	regulatory region 564422	1952 bp distal
Rr564423	regulatory region 564423	1963 bp distal
Rr564424	regulatory region 564424	1815 bp distal
Rr564425	regulatory region 564425	1314 bp distal
Sppl2a	signal peptide peptidase like 2A	1804 bp upstream
Tssr26085	transcription start site region 26085	1949 bp upstream
Tssr26086	transcription start site region 26086	1906 bp upstream
Tssr26087	transcription start site region 26087	1875 bp upstream
Tssr26088	transcription start site region 26088	1812 bp upstream
Tssr26089	transcription start site region 26089	1798 bp upstream
Tssr26090	transcription start site region 26090	1159 bp upstream