rs50898292 SNP Detail

Summary

• ID
  rs50898292
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:34724413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTACACCG ACCCGGAAGG
  CGGCTCCAGA GAACTCAGGT TCCTGAGAAC AGGCGTTCCT CCCACCTCCT CCCGGTTCAC
  CCTTCCCGAC GCTCGCCCTT ACCTCTCTCC TCACGCTTCC TGGCTGCTGC AACCGGAGGC
  CTGTCCGGAG AGCACTGGAC TCCCAGATTC GTGACACTAA CTCCACCTCA GCACAGAAAT
  W
  ACTCCCTCTT CACTCGGCAG CAGCACTGCT AAGTAAGCGC CGGGGATTTT TGAATACGGT
  TCCCGCGAGA ACTCACGTTT CTCACGAGAT GTCTTGTCCA ATCCGCGCCT CCGGGGCAAA
  CGAGTGGGGC GCCTTGCAGA GACTGCGCAT GTGCATGCTC CGCGACTTGG GCTTTTGGGC
  GTTCCTGCTG CTTCGTTTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63335208	NES17512769	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50898292					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63335208	NES17512769	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:34724413 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2724	CpG island 2724	within coordinates
Gm57348	predicted gene, 57348	96 bp upstream
Rr402479	regulatory region 402479	within coordinates
Rr444978	regulatory region 444978	within coordinates
Rr444979	regulatory region 444979	45 bp proximal
Rr444980	regulatory region 444980	129 bp proximal
Spdl1	spindle apparatus coiled-coil protein 1	mRNA-UTR
Tssr100930	transcription start site region 100930	133 bp upstream
Tssr100931	transcription start site region 100931	200 bp upstream
Tssr107398	transcription start site region 107398	within coordinates
Tssr107399	transcription start site region 107399	17 bp downstream
Tssr107400	transcription start site region 107400	45 bp downstream