rs50898392 SNP Detail

Summary

• ID
  rs50898392
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6180917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAGGGGA CAGACAAAAG
  GTGACTTAGA CTTTAGCAGT TGTATTTTCC AATCTTACTT AACTCTCTTA ATATGTTTTC
  ATTAAATTCT TTTATCTATT AATTATACAT GTAGATAAAG GTGATTTTAG GTACTTCCTA
  CTTTTGTATG ACTTTTCACC TTGTGATAAT ATACCAACTG GAATTTGGGA TGATACTGAA
  K
  AGCACATTTT GTGAGCATCT TTGGTTGATT CTTAGTTTTA TCTTTGCCAG TGTTGATTTT
  AATCACTTTC TCCATTTTGC CAAATTATTT TCTGGAAAGG CGAACCAGAA CTGGAGAATA
  ATTGTCCACA CCCACAGTGT GCTGAGTGAC CATGAGTGCA GGCCACACCC ACAGTGTGCT
  GAGTGACCGT GAGTGCAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60525304	NES16542744	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50898392					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525304	NES16542744	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6180917 () rs orientation: forward

Symbol	Name	Function Class
Gm15590	predicted gene 15590	1212 bp downstream
Gm55175	predicted gene, 55175	1194 bp downstream
Gm66616	predicted gene, 66616	1030 bp upstream
Rr392221	regulatory region 392221	624 bp downstream
Rr521310	regulatory region 521310	927 bp distal
Rr521311	regulatory region 521311	1592 bp proximal
Tulp4	TUB like protein 4	within coordinates