rs50900106 SNP Detail

Summary

• ID
  rs50900106
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:101009818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTCACC TGGCAGAAAA
  GTGGCTGGCT TCACTCTGGG GACTTGATTA ATTCCAGTAC ACAGTTAGGC TTGAACTGGT
  CATTTTGTCT AAGTGTGATT TCTTGCGAGC TTCTAGTGGC GAGAGTTATA TTAAGTGTCT
  TATGGCACTA GGATACGAGA ATGGTTACCA GCCTGGACTC AGCTGGGATG AGGGCAGGGC
  G
  GTGATGACAC AGAATGTGTC ACACTCTGTG AGTGAGTCAT ACAGGCAAGT GCTGTGCTGA
  GCTGGGCAGT CATCTATCTG GCCCTGCCCC TGAACCTGCT TCTGGCCTTC CTTGACTCTG
  TTCACTGCAA GGAATTCATG TGACCTCACA GCTCCGTCTG GCATGCCACA GGAAGACTTG
  GGGTTACCAA GCCTGCTCTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148929917	ENSMUSSNP735251	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50900106					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101009818 () rs orientation: forward

Symbol	Name	Function Class
Gm73351	predicted gene, 73351	64 bp upstream
Gpat3	glycerol-3-phosphate acyltransferase 3	Intron
Rr378349	regulatory region 378349	480 bp upstream
Rr615578	regulatory region 615578	415 bp distal
Rr615579	regulatory region 615579	within coordinates
Rr615580	regulatory region 615580	75 bp proximal
Tssr47495	transcription start site region 47495	65 bp upstream