rs50900115 SNP Detail

Summary

• ID
  rs50900115
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31343244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCC CTCCTTCCGT CCTCATACCC
  S
  AGGAGGCAGT TGCCATGGGT CTCGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146403565	ENSMUSSNP4508572	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320222242	CHEV_2_31308752	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50900115					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31343244 () rs orientation: forward

Symbol	Name	Function Class
Gm74859	predicted gene, 74859	within coordinates
Hmcn2	hemicentin 2	within coordinates
Rr554631	regulatory region 554631	1403 bp distal
Tssr17185	transcription start site region 17185	555 bp upstream
Tssr17186	transcription start site region 17186	1219 bp upstream
Tssr17187	transcription start site region 17187	1246 bp upstream
Tssr17188	transcription start site region 17188	1537 bp upstream