rs50900556 SNP Detail

Summary

• ID
  rs50900556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164267656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCTTTCTG CTACCAATAC ATCTACCTTG AAAACTTGGA
  ATAGAAAACA CTTATTGATC AAAGAGGTGG TCAGAATCTG TCCTCCGAAG ACAGGAACCA
  R
  GCACACCAAT GGGAATGATG AGTCACAGCA CTCCAACAAC AACAACAAAA CAACCCGATC
  CCACTGACAA GCTAGCAGGG GATTTGGGTA GGAGGGACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60337235	NES15839923	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	A	G	G	A	G	G	G	G
ss145978647	ENSMUSSNP1462999	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50900556					SNP	G	G	G	G	G	G	G	A	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337235	NES15839923	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164267656 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr13721	regulatory region 13721	1456 bp distal
Rr20253	regulatory region 20253	256 bp distal
Rr25446	regulatory region 25446	1667 bp distal
Rr25447	regulatory region 25447	1171 bp distal
Rr25448	regulatory region 25448	696 bp distal
Rr31656	regulatory region 31656	within coordinates
Tssr9784	transcription start site region 9784	1580 bp downstream
Tssr14738	transcription start site region 14738	1892 bp upstream
Tssr14739	transcription start site region 14739	1708 bp upstream
Tssr14740	transcription start site region 14740	1667 bp upstream
Tssr14741	transcription start site region 14741	1590 bp upstream
Tssr14742	transcription start site region 14742	1548 bp upstream
Tssr14743	transcription start site region 14743	1471 bp downstream
Tssr14744	transcription start site region 14744	1520 bp downstream