rs50901630 SNP Detail

Summary

• ID
  rs50901630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30735392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGCAAAC TAAAAATCAT
  CTGATGATTG ATGTAAGTAT TCCAGTTATT ATCTGCTGTC TTCCTCCACT ACAGTGTCAG
  TTTCAGAGGG TCCCACTATG TAGCCTGGGC TGTCATGGAA CTTGCTATGT AGTCCAGGCT
  AGCCTCAAAC TTGCTGCCAT CTTCCTTCTG TTTCCCAGGT GCAAAGATTA CAGGAATACA
  Y
  CACCACACCC ATCAATAGCA AAGATATTTG TCTGTCTTGT TCATGGCTGT CTGGCACACG
  CATGAATCCA CGCTGAATAC ACAGTTGAAG GGGTGATGTG GGCATGTCTA TGTCATCAGT
  GGGGGTTCAA TAAGCAGGAA GGGGGGATAT CAGAGGGGAA GAATCAGGAT GACCAAATGG
  AGCCCCTGCT GGTCTACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148696836	ENSMUSSNP464573	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss322138586	CHEV_7_31820986	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50901630					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30735392 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	876 bp upstream
Gm71772	predicted gene, 71772	1022 bp upstream
Tssr2191	transcription start site region 2191	482 bp upstream
Tssr65830	transcription start site region 65830	699 bp downstream
Tssr65831	transcription start site region 65831	1021 bp upstream
Tssr65832	transcription start site region 65832	1441 bp upstream
Tssr65833	transcription start site region 65833	1838 bp upstream
Tssr65834	transcription start site region 65834	1892 bp upstream
Tssr71891	transcription start site region 71891	490 bp downstream
Tssr71892	transcription start site region 71892	1051 bp downstream
Tssr71893	transcription start site region 71893	1893 bp downstream
Tssr71894	transcription start site region 71894	1914 bp downstream
Tssr71895	transcription start site region 71895	1927 bp downstream
Tssr71896	transcription start site region 71896	1957 bp downstream