rs50902138 SNP Detail

Summary

• ID
  rs50902138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26841379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATTCAGC AGCCTGAAGA
  GCAAAATGTG TCTGTGGCTT TCATGTCCCC ACGTATATAT CTGTGGTTCC CACAAAGTAA
  CAAACTGTTC CTGAGCCACA GTTCTCAGTA ATTAAGCACT ATATATCACA TATATAGTAT
  ATAATATACA CTAATAATAG ATCACATGGG ATGGGGCCTC GTCGAGACAG AATTCACTTG
  Y
  TGGGCCTGAT CTGTTCTTTC CCAACAGGAG CCATTCCCAG GGCTCCCTGT GTGTAGGACC
  CAAGGGACCT AACTGATCTG GGTTATATCA TTTGTTTTAT AGCTTTTTAA AGGAGAACGT
  TTATCTTTTG TTTGTTTGTT TGTGGGAAAA TATTTTTTCT TTTTTTATTA GATATTTTCT
  TTATATACAT ACGTTTATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60554444	NES16568361	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	T	T		T
ss325342570	CHEV_17_26759350	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs50902138					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554444	NES16568361	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26841379 () rs orientation: forward

Symbol	Name	Function Class
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1	Intron
Gm17218	predicted gene 17218	within coordinates
Rr523902	regulatory region 523902	1939 bp distal
Rr523903	regulatory region 523903	946 bp distal
Rr523904	regulatory region 523904	224 bp distal
Tssr143257	transcription start site region 143257	884 bp downstream
Tssr143258	transcription start site region 143258	1773 bp upstream
Tssr143259	transcription start site region 143259	1793 bp upstream