rs50902242 SNP Detail

Summary

• ID
  rs50902242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18092253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCATCACA ACTAGAGATT AAGACAGAGC CCCTTGGAAA
  TAAGGTACTG TACAGTCCCC TCAATCATAG GTTCCTCACA CTCCCAAGTT CATAATAACC
  Y
  GAGCTTCCTT TTTCACTGTA CTTTTCACCT TAGTGATTGT TTTCTTATCC TCTGGGATGG
  AGTCTAAAGG GAAAATTTAT TTATTTATAG CTCTTGTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60545759	NES16558026	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	C	C	T	C	C		C	C	C	C		T
ss145227510	ENSMUSSNP226178	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss325312337	CHEV_17_18008955	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50902242					SNP	T	T	T	C	T	C	C	C	T	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60545759	NES16558026	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18092253 () rs orientation: forward

Symbol	Name	Function Class
Gm36907	predicted gene, 36907	1470 bp downstream
Rr340653	regulatory region 340653	within coordinates
Tssr5021	transcription start site region 5021	841 bp downstream
Tssr5022	transcription start site region 5022	818 bp downstream
Tssr5023	transcription start site region 5023	284 bp upstream
Tssr142818	transcription start site region 142818	19 bp downstream
Tssr142819	transcription start site region 142819	1748 bp upstream