rs50902648 SNP Detail

Summary

• ID
  rs50902648
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136348063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT TTAAAGGGAA ATATGAGATA
  C
  CTTGTATAAA AAAGAAGATG GCCAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147573123	ENSMUSSNP5397316	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321356435	CHEV_4_136176667	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50902648					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136348063 () rs orientation: forward

Symbol	Name	Function Class
Lactbl1	lactamase, beta-like 1	1869 bp upstream
Rr86434	regulatory region 86434	338 bp proximal
Rr103033	regulatory region 103033	664 bp distal
Rr106544	regulatory region 106544	694 bp proximal
Rr398615	regulatory region 398615	573 bp upstream
Tssr39716	transcription start site region 39716	1860 bp upstream
Tssr39717	transcription start site region 39717	1879 bp upstream