rs50902698 SNP Detail

Summary

• ID
  rs50902698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67470385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTGCCC AGCTGGGAAC
  ATGGCCGGGA CAAGAAAGAA GGACAAGAGA TTAGTTAAAT TCAGCAGACT TAAAAAAAAC
  AAAAACAAAA CAAAACTAAA ACTAAAACCA AACCAAAACA AAAACGAGCA GGCCCAGCTC
  GAAGACTCTG GGTGGTTAGT TTTTCCTGGG GTCGCAATTA TCCGTAAAGT CTTGTGTAAC
  Y
  GAACTGCGCA GCTGAAAGAG CAGAGGTGGA TCTTATCTCG ACCATTTTCT CCCCCACCCT
  CCCTCTTTTG TTGGATAACT GCCGAATGCA ACTAGGCCTC TTATTTTCTT ACACTCAACT
  GTACCTCAAG CCACCCTGCC TCCCCTTTAA GCCTGAAATT AAAGACCTGG AGTTAGGGTA
  CACCATCAAC GCGACTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62435916	NES17250936	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50902698					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62435916	NES17250936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67470385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6657	CpG island 6657	681 bp distal
Cpgi6658	CpG island 6658	281 bp proximal
Cpgi6659	CpG island 6659	1245 bp proximal
Cpgi6660	CpG island 6660	1964 bp proximal
Ebf2	early B cell factor 2	356 bp upstream
Gm20675	predicted gene 20675	within coordinates
Rr297418	regulatory region 297418	within coordinates
Tssr126327	transcription start site region 126327	246 bp upstream
Tssr126328	transcription start site region 126328	350 bp upstream
Tssr126329	transcription start site region 126329	499 bp upstream
Tssr126330	transcription start site region 126330	966 bp upstream
Tssr126331	transcription start site region 126331	1652 bp upstream
Tssr126332	transcription start site region 126332	1684 bp upstream
Tssr126333	transcription start site region 126333	1795 bp upstream
Tssr126334	transcription start site region 126334	1859 bp upstream
Tssr126335	transcription start site region 126335	1909 bp upstream