rs50904429 SNP Detail

Summary

• ID
  rs50904429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGATAGT CTCTCATTCA
  TGTTCCTATA GGCTAACCTG ACCTAGAAAA TCCCTCACGG GCAAGCTCAT AGGTTTGCCC
  CTAGATGATT CTAGAGCCCG TCAGGGAGTC AGTCATTAAC CATCTTGCAC ACGCATGAGA
  TATTCTGTTT CAAACAAAAA GTGGAAGGTA CCCAAGGACC AGAACTTATC CTAATGACCA
  Y
  GCACACGCTA TGCTCCCTGC ACTCCTGGAA CTGCTTCCAA GCAAGTGGCT GTCTCCTCTG
  CAGCCCTGTC CCAAGCCCTC AACACCACGG TGCTGCAGGG CATGGCCGGC CAGTCCTTGA
  GGGTGTCATG TACTTATGAC GCCTTGAAGC ACTGGGGGAG ACGCAAGGCC TGGTGTCGGC
  AGCTGGGTGA GGAGGGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62767928	NES17350328	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50904429					SNP	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62767928	NES17350328	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655421 () rs orientation: forward

Symbol	Name	Function Class
Rr335234	regulatory region 335234	1420 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1976 bp downstream
Tssr145094	transcription start site region 145094	1948 bp downstream
Tssr145095	transcription start site region 145095	1900 bp downstream
Tssr145096	transcription start site region 145096	1867 bp downstream
Tssr145097	transcription start site region 145097	862 bp downstream
Tssr145098	transcription start site region 145098	520 bp downstream
Tssr145099	transcription start site region 145099	87 bp upstream
Tssr145100	transcription start site region 145100	116 bp upstream
Tssr145101	transcription start site region 145101	153 bp upstream
Tssr145102	transcription start site region 145102	252 bp upstream
Tssr148525	transcription start site region 148525	297 bp downstream