rs50904978 SNP Detail

Summary

• ID
  rs50904978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:84104949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGACACA GAAAAGAAAT
  CTTAATACAG CATAACATAA AAGATTGCAC GTTGCAGGAA GACGTTCAGG GGGCTGTGTT
  GTAATGCACT GGCTGATCTC GGGCGGAACC CATGAGTCCT GAGTCTAGTT AGGCAGACAT
  CAGTTCCTGC GATTCTTAAA CCTGTTAGTT CCCCTCCCCC GCGTGTACAT GCATACACAC
  R
  CGCCCACGTG GATCTGAACC ACTCTTGGGT GAAATACGTC CTACATTTGA GAGGAAAAAA
  TACCTGTTTC ACTTTTGCAC CCTTAGTCTG GGGGGTTAGA TTTGATCGGT GAGGGACAGT
  GTGGCTTTTG TATTTCTGCA ACTCAGAGGT TAAGTGGAAA ACAGGAGACA TTTTTAAATT
  AAAACAAACA CCTAAAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147631359	ENSMUSSNP3463091	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50904978					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:84104949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10336	CpG island 10336	426 bp distal
Cpgi10337	CpG island 10337	397 bp proximal
Gm56504	predicted gene, 56504	92 bp upstream
Gm58899	predicted gene, 58899	853 bp upstream
Ptgr3	prostaglandin reductase 3	1301 bp upstream
Rr353212	regulatory region 353212	within coordinates
Rr405764	regulatory region 405764	1955 bp upstream
Tshz1	teashirt zinc finger family member 1	within coordinates
Tssr152202	transcription start site region 152202	823 bp upstream
Tssr152203	transcription start site region 152203	1253 bp upstream
Tssr152204	transcription start site region 152204	1362 bp upstream
Tssr152205	transcription start site region 152205	1394 bp upstream
Tssr152206	transcription start site region 152206	1856 bp upstream
Tssr154120	transcription start site region 154120	833 bp upstream
Tssr154121	transcription start site region 154121	555 bp upstream
Tssr154122	transcription start site region 154122	421 bp upstream
Tssr154123	transcription start site region 154123	384 bp upstream
Tssr154124	transcription start site region 154124	333 bp upstream
Tssr154125	transcription start site region 154125	66 bp upstream
Tssr154126	transcription start site region 154126	878 bp downstream