rs50905957 SNP Detail

Summary

• ID
  rs50905957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20808777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC AAACCAAAAG TATGCTGTGC
  Y
  ATGTGCTGGG GGGGATGATG CTGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136224726	ENSMUSSNP955552	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50905957					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20808777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21406	CpG island 21406	334 bp proximal
Eif3g	eukaryotic translation initiation factor 3, subunit G	within coordinates
Rr674623	regulatory region 674623	1132 bp proximal
Rr674624	regulatory region 674624	1194 bp proximal
Tssr2789	transcription start site region 2789	1090 bp downstream
Tssr2790	transcription start site region 2790	1095 bp downstream
Tssr83934	transcription start site region 83934	405 bp upstream
Tssr88339	transcription start site region 88339	1298 bp upstream
Tssr88340	transcription start site region 88340	1111 bp downstream