rs50906409 SNP Detail

Summary

• ID
  rs50906409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50582632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ACTGGTTAGT TAATATTGCT GTTCCTCTTA TAGGGTTACA
  GATCCCTTCA GCTCCTTGGG TACTTTCTCT AGCTCCTCCG TTGGGGGCCC TGTGATCCAT
  Y
  CTGACTGTGA ACATCCACTT CTGTATTTGC CAGACACTGG CATAGCCTCA CAGGAGACAG
  CTATATCAGG GTCATGTCAG CAAAATCTTG CTGACATATG C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148055875	ENSMUSSNP3693486	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50906409					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50582632 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	1953 bp upstream
Rr379340	regulatory region 379340	1544 bp upstream