rs50907008 SNP Detail

Summary

• ID
  rs50907008
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97994884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCTTGC ACAGTTTCTT
  CCTTAACTGT CTGACTCTGA CTTTATCGTA GGAGCTGGAG ATGCAGGCTA GAGCGCATGG
  ACTTTCCCTT ATCCCATCCA CCGGTCTCTG CTCGCCTGAT CTGGTGAATC GGATCATCAA
  GCAAGAACCA GTTCTTGAGA ACTGCAGCCA GGAACTTGTA CAGCACCAGG CAGACCTGAC
  R
  TGTACGACAA CTCTGGATCT CACGGACGGT ACCATCACCT TTACCAACAA CCTCGGCACC
  ATGCCGGAGA GCAGCCCGGC CTACAGCATC CCCAGGAAGA TGGGCTCCAA CTTGGAAGAC
  ATCCTGATGG ACGATGCCCT CTCACCTGTT GGAGTCACCG ACCCACTGCT GTCATCAGTG
  TCGCCAGGAG CTTCAAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60914397	NES16220473	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50907008					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60914397	NES16220473	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97994884 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17778	CpG island 17778	59 bp proximal
Mitf	melanogenesis associated transcription factor	within coordinates
Rr145432	regulatory region 145432	1736 bp distal
Tssr57949	transcription start site region 57949	517 bp upstream
Tssr57950	transcription start site region 57950	564 bp upstream
Tssr57951	transcription start site region 57951	742 bp upstream
Tssr57952	transcription start site region 57952	779 bp upstream
Tssr57953	transcription start site region 57953	1089 bp upstream
Tssr57954	transcription start site region 57954	1144 bp upstream