rs50908199 SNP Detail

Summary

• ID
  rs50908199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26495360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAAATGC TGGTTCTTAG
  GGGTCACTGG ACCTTGCTCC TCTGAGAACC GAACTCTCTC CTGTGGAGGA CGATTATCTG
  CTGCATAATT TTACTCCCTT TTTAGTTCAG TCAAACTGAA AGAAAAATAA ACAGACTGTA
  TTCTAATAAC AACAGTCCGT AGATAGCCAG AAGATGTAGC TTGTTGAAGG ATAGCTGGGC
  R
  TGAATGTCCC TGTAGCTGGT CGGAGTTTCC TTCCCATCTC AGCCTCACCA GTCCAGCTTC
  AGGTCAGCTT TACTCCACAC ATACTTTCCG CCACGCTTCA GAAACATCTT CTCATCAAAT
  CCACTGAACT TTATTGCTTC TTCCACGCCA ACATCCAGAA TAGACTTGGA AGGGTCCTTC
  CGGCCACCGG TACAGTTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52328569	NES15372022	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50908199					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328569	NES15372022	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26495360 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	972 bp distal
Rr464137	regulatory region 464137	1014 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	1608 bp downstream
Tssr112999	transcription start site region 112999	1543 bp downstream
Tssr113000	transcription start site region 113000	1442 bp downstream
Tssr113001	transcription start site region 113001	955 bp downstream
Tssr113002	transcription start site region 113002	931 bp downstream
Tssr113003	transcription start site region 113003	843 bp downstream
Tssr113004	transcription start site region 113004	792 bp downstream
Tssr113005	transcription start site region 113005	783 bp downstream
Tssr113006	transcription start site region 113006	416 bp downstream
Tssr113007	transcription start site region 113007	326 bp downstream
Tssr113008	transcription start site region 113008	158 bp downstream
Tssr113009	transcription start site region 113009	143 bp downstream
Tssr113010	transcription start site region 113010	within coordinates
Tssr115905	transcription start site region 115905	1839 bp upstream
Tssr115906	transcription start site region 115906	1719 bp upstream
Tssr115907	transcription start site region 115907	1660 bp upstream
Tssr115908	transcription start site region 115908	1616 bp upstream
Tssr115909	transcription start site region 115909	1532 bp upstream
Tssr115910	transcription start site region 115910	1478 bp upstream
Tssr115911	transcription start site region 115911	1430 bp upstream
Tssr115912	transcription start site region 115912	1416 bp upstream
Tssr115913	transcription start site region 115913	1381 bp upstream
Tssr115914	transcription start site region 115914	1333 bp upstream
Tssr115915	transcription start site region 115915	1290 bp upstream
Tssr115916	transcription start site region 115916	1249 bp upstream
Tssr115917	transcription start site region 115917	1199 bp upstream
Tssr115918	transcription start site region 115918	1184 bp upstream
Tssr115919	transcription start site region 115919	1153 bp upstream
Tssr115920	transcription start site region 115920	1121 bp upstream
Tssr115921	transcription start site region 115921	745 bp upstream
Tssr115922	transcription start site region 115922	720 bp upstream
Tssr115923	transcription start site region 115923	627 bp upstream
Tssr115924	transcription start site region 115924	567 bp upstream
Tssr115925	transcription start site region 115925	552 bp upstream
Tssr115926	transcription start site region 115926	201 bp upstream
Tssr115927	transcription start site region 115927	160 bp upstream
Tssr115928	transcription start site region 115928	1811 bp downstream
Tssr115929	transcription start site region 115929	1841 bp downstream