rs50908393 SNP Detail

Summary

• ID
  rs50908393
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46384933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCG AAGAGAAAGA ATAGGTAAAT
  K
  TTTTTTAAAA CAGCCAGGCA TTTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60312990	NES15818143	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	G	T	G		G	G	G		G
ss325822477	CHEV_19_46470984	CHEVERUD	SCREENING_POP	f	SNP							G				G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50908393					SNP	T	T	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312990	NES15818143	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46384933 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	753 bp upstream
Cpgi11001	CpG island 11001	592 bp distal
Cpgi11002	CpG island 11002	196 bp proximal
Gm59146	predicted gene, 59146	337 bp downstream
Rr405999	regulatory region 405999	1154 bp downstream
Rr406000	regulatory region 406000	510 bp downstream
Rr406001	regulatory region 406001	132 bp upstream
Rr548727	regulatory region 548727	1391 bp distal
Rr548728	regulatory region 548728	767 bp distal
Rr548729	regulatory region 548729	257 bp distal
Rr548730	regulatory region 548730	within coordinates
Rr548731	regulatory region 548731	247 bp proximal
Rr548732	regulatory region 548732	355 bp proximal
Rr548733	regulatory region 548733	1067 bp proximal
Rr548734	regulatory region 548734	1109 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	402 bp upstream
Tssr156751	transcription start site region 156751	1129 bp downstream
Tssr156752	transcription start site region 156752	1101 bp downstream
Tssr156753	transcription start site region 156753	391 bp upstream
Tssr156754	transcription start site region 156754	515 bp upstream
Tssr159650	transcription start site region 159650	738 bp upstream