rs50908462 SNP Detail

Summary

• ID
  rs50908462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191571547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGCAGT GGTTAGCTCT
  TACTTTGCAG TAGGGACTTA GGGGTGTGGG AGGGCTACAA AAGTCACACA GAGCCAGAGA
  GCCCGGCACC TGAAAAGCAG TCACTCTGAG GCTCCTGGCT GTTCTCCTCC ATCACACAGG
  GCAGGATTAA TTATTAATGT TTACGATCCC ACAGAAGCTG GTCTCTGTGA ACCACAAGCC
  Y
  AACACTTCTT TTCCAACCTC CAACCACTTA ATCATGGTTT TGGCTGGGTC AGCGTAACAG
  CCCCATAACC TCGGAAACAG AGTGCTGTGA AGGCCTTTAT CTGCTGTTCC TGGGGGCAAG
  GGCCAAGTTC ACTGGGTGCA GCTGGCGGCA TGGGAGCTGA TAATGCTCTC GAAGAAACCC
  AGATGTCTTT GTTGCCTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60360497	NES15857423	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50908462					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360497	NES15857423	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191571547 () rs orientation: forward

Symbol	Name	Function Class
Rr426234	regulatory region 426234	1405 bp distal
Rr426235	regulatory region 426235	within coordinates
Rr426236	regulatory region 426236	588 bp proximal
Rr426237	regulatory region 426237	1075 bp proximal