rs50908893 SNP Detail

Summary

• ID
  rs50908893
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151995707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACACAC ACACTCACAC ACACACACAC ATGCACATTA ATAAAAATAG ATCTTTAAAA
  ATTTTTTTAA AAATCTAAGG TAAATTTGAT GTAGCTTTCA AACATAAGAA AGTAATTGTT
  TTCTTTATAA TTTTGTATTT GGCTTTGTAC CTCTGGCTGG CCTCGAGCTC CCTGAATAGA
  S
  TAGGCTGGCC TTGAGCTCAG CGAGAGCTGG GACAGAAGGC AGGGCAGATG GCTGGCTTTA
  CTATTAGCCA CCTTGTTTCA TTTTAGGAAA GGAGTACTTT TTACCCCAGA TGCAAATCTG
  AAACAAGTAA TGAGGAGCCT CGTTTCAAGC AGCTCTGTCC ACACTTGCAG CATCACAGCA
  TTCTGTCTAG ACGGAGTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136101786	ENSMUSSNP6145666	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50908893					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151995707 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Rr587516	regulatory region 587516	1028 bp distal
Tssr32405	transcription start site region 32405	256 bp upstream