rs50909999 SNP Detail

Summary

• ID
  rs50909999
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:21817827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAATATTC ATCCTAAGAA
  AATATTAAGT ATTGCTGCTT AAAAAGAAGA GAGAAAATCA GGAGTCTTCT AAGAAGTCTT
  CTAGAGGGCT CTACTCAAAA CCAACTGGAA CAGAGGATGG CTCTGCCCCT TAGCAATGTA
  AAACCATGAC CTCAGCCTAC ATGGTGAGCA TGTTCTCTGC TCCACACTTG TCTCTACACC
  K
  GTCTTTTCTA AGACAGGGAC ATGTTCAGTT GCCCAGGCTA GCTCTTAACT CATTCTATAG
  CCAAAGCTGG CCTTGAATTC AGGATCTTGA ATGTTGAGAT CACAGGCATA GAATATGTCT
  ATCATACCCA GCTCAAATGA CATTGATTTA AGTTGGATTC GGCCCTGGAG GCTGCTTACA
  CCAGCAGACA GTCCCTTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61125046	NES16636972	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G	G	T	G	G	G	T		G	G	T	G
ss148010650	ENSMUSSNP2736644	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50909999					SNP	G	G	G	G	G	G	G	T	G	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61125046	NES16636972	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:21817827 () rs orientation: forward

Symbol	Name	Function Class
Fbxl13	F-box and leucine-rich repeat protein 13	within coordinates
Gm8539	predicted gene 8539	1165 bp downstream
Rr607927	regulatory region 607927	1585 bp proximal