rs50910742 SNP Detail

Summary

• ID
  rs50910742
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95723152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGA GAGTCCTTCT GGGGCAGACT
  K
  CAGGGCTTCC GTGTTCCCTT TCCAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132668264	ENSMUSSNP1853756	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50910742					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95723152 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	761 bp distal
Cpgi3604	CpG island 3604	1345 bp proximal
Phospho1	phosphatase, orphan 1	186 bp downstream
Rr369341	regulatory region 369341	862 bp upstream
Rr369342	regulatory region 369342	1917 bp upstream
Rr455202	regulatory region 455202	1624 bp distal
Rr455203	regulatory region 455203	413 bp distal
Tssr3654	transcription start site region 3654	1782 bp downstream
Tssr104394	transcription start site region 104394	1558 bp downstream
Tssr104395	transcription start site region 104395	989 bp downstream
Tssr104396	transcription start site region 104396	953 bp downstream
Tssr104397	transcription start site region 104397	788 bp downstream
Tssr110283	transcription start site region 110283	503 bp upstream
Tssr110284	transcription start site region 110284	1790 bp downstream
Tssr110285	transcription start site region 110285	1809 bp downstream
Tssr110286	transcription start site region 110286	1842 bp downstream