rs50911105 SNP Detail

Summary

• ID
  rs50911105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141151817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACT GTTACCTTCC TTGTAACTCT
  Y
  GAAACCTCAA ACCCAGGGCT ACCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147736169	ENSMUSSNP1201479	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50911105					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141151817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	1330 bp proximal
Gm70191	predicted gene, 70191	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	319 bp proximal
Rr603760	regulatory region 603760	797 bp proximal
Rr603761	regulatory region 603761	1788 bp proximal
Tssr40062	transcription start site region 40062	1983 bp downstream
Tssr40063	transcription start site region 40063	497 bp downstream
Tssr40064	transcription start site region 40064	436 bp downstream
Tssr40065	transcription start site region 40065	409 bp downstream
Tssr40066	transcription start site region 40066	305 bp downstream
Tssr40067	transcription start site region 40067	251 bp downstream
Tssr40068	transcription start site region 40068	196 bp downstream
Tssr40069	transcription start site region 40069	69 bp downstream
Tssr40070	transcription start site region 40070	11 bp upstream
Tssr40071	transcription start site region 40071	35 bp upstream
Tssr40072	transcription start site region 40072	80 bp upstream
Tssr40073	transcription start site region 40073	103 bp upstream
Tssr40074	transcription start site region 40074	128 bp upstream
Tssr40075	transcription start site region 40075	141 bp upstream
Tssr40076	transcription start site region 40076	168 bp upstream
Tssr40077	transcription start site region 40077	187 bp upstream
Tssr40078	transcription start site region 40078	1903 bp upstream
Tssr44314	transcription start site region 44314	1867 bp upstream
Tssr44315	transcription start site region 44315	432 bp upstream
Tssr44316	transcription start site region 44316	334 bp upstream
Tssr44317	transcription start site region 44317	306 bp upstream
Tssr44318	transcription start site region 44318	52 bp downstream
Tssr44319	transcription start site region 44319	1062 bp downstream