rs50913316 SNP Detail

Summary

• ID
  rs50913316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185416899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acaggtctc cgtgctggtt tggagagcac
  cttattcact gagccatctc cttgggccTC TCACATATTG TTAGATTTCG TGGTTGGTGT
  GGGGAATCAG ACAGCGCTGA TGAAGGCATG AGCAGAGACT GCAAGGGCTA GAGTAAGCAA
  Y
  GGAGAACCCA AGTGCATTGA CGACCTGGAA GCAAAGTCGG GAGCGAAGAC TTGACTGTTA
  AAGCCCAGTA CTCACAGCCA TGGTCTTCAG AAAACATACC GCCCCCTGCT GGGAGTAGGC
  GGCTCTACAG GCCTGGCCAG CTGAAGATCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320178636	CHEV_1_187508581	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50913316					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss146440080	ENSMUSSNP2994107	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185416899 () rs orientation: forward

Symbol	Name	Function Class
Rr425422	regulatory region 425422	96 bp proximal
Rr425423	regulatory region 425423	284 bp proximal