rs50914339 SNP Detail

Summary

• ID
  rs50914339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144575461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTAGAGC CCTTGCCTAG
  AGTCCCCCAG TGAGAGCCTA GAGGAGTTGC TTAGTGGTAG AGCTCCAGAC TAGTACGTGC
  AAGGCCATAA GATCAGTTCC AGGTGCTTCG GTAAACAAAT AAGCCAATAA ATAAATTCTA
  GAAGAAGAAT TAAGGACAAC ATCGGAAATG GAGAAACTCC CTCTCGCCCA CAGGGGTTTG
  Y
  GCTGCCCTTT TATCAGCTTT TTTGTTGTGC TTGAGTGGAA GTTGTCCAAC TCTGAAAAAG
  CAGAGGAGAG CAATGCCCTC ATAATGAGCT GTCTGGAGTG TTCCCTCTCA TTTGAGTTAT
  GAGCACTGAT TAGTTCCAGG GGGACTCCTT CACCTGAGCT GGCCCCATGC TCTCCCTACC
  GCCCCCTGGT GGTAAGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60852895	NES15999213	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50914339					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852895	NES15999213	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144575461 () rs orientation: forward

Symbol	Name	Function Class
D5Dcr36	DNA Segment, Chr 5, Derry C. Roopenian 36	1822 bp proximal
D5Mit43	DNA segment, Chr 5, Massachusetts Institute of Technology 43	1777 bp proximal
D5Mit43.2	DNA segment, Chr 5, Massachusetts Institute of Technology 43.2	1884 bp proximal
Gm71822	predicted gene, 71822	within coordinates
Rr624456	regulatory region 624456	97 bp proximal
Rr624457	regulatory region 624457	176 bp proximal