rs50914776 SNP Detail

Summary

• ID
  rs50914776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148491166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC AGCCCCCTTT CCCATGCCAC
  R
  CCTACTCTCC TCAGCCTCCT TCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss144691563	ENSMUSSNP3926146	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321718364	CHEV_5_149365932	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50914776					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148491166 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	495 bp upstream
Cpgi17076	CpG island 17076	1209 bp distal
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	431 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr625194	regulatory region 625194	1705 bp distal
Rr625195	regulatory region 625195	1077 bp distal
Rr625196	regulatory region 625196	1539 bp distal
Rr625197	regulatory region 625197	505 bp distal
Rr625198	regulatory region 625198	201 bp distal
Rr625199	regulatory region 625199	within coordinates
Tssr49862	transcription start site region 49862	1963 bp downstream
Tssr54574	transcription start site region 54574	1928 bp upstream
Tssr54575	transcription start site region 54575	1839 bp upstream
Tssr54576	transcription start site region 54576	1668 bp upstream
Tssr54577	transcription start site region 54577	1513 bp upstream
Tssr54578	transcription start site region 54578	475 bp upstream
Tssr54579	transcription start site region 54579	331 bp upstream
Ubl3	ubiquitin-like 3	1567 bp upstream