rs50914955 SNP Detail

Summary

• ID
  rs50914955
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAC CACCCTCAGA GACTCCAGGG
  W
  GTCAAGTGCA TCCTTGGACA TTCCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136330454	ENSMUSSNP2984529	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss322916251	CHEV_9_40264510	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50914955					SNP	T	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368221 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	558 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	1500 bp distal
Rr676840	regulatory region 676840	671 bp distal
Rr676841	regulatory region 676841	1069 bp distal
Rr676842	regulatory region 676842	1756 bp proximal
Tssr84449	transcription start site region 84449	1604 bp downstream
Tssr84450	transcription start site region 84450	1015 bp downstream
Tssr84451	transcription start site region 84451	730 bp upstream
Tssr84452	transcription start site region 84452	758 bp upstream
Tssr84453	transcription start site region 84453	1499 bp upstream
Tssr88934	transcription start site region 88934	1541 bp upstream
Tssr88935	transcription start site region 88935	1490 bp upstream
Tssr88936	transcription start site region 88936	1469 bp upstream
Tssr88937	transcription start site region 88937	1405 bp upstream
Tssr88938	transcription start site region 88938	1148 bp upstream
Tssr88939	transcription start site region 88939	1113 bp upstream
Tssr88940	transcription start site region 88940	1081 bp upstream
Tssr88941	transcription start site region 88941	792 bp upstream
Tssr88942	transcription start site region 88942	777 bp upstream
Tssr88943	transcription start site region 88943	749 bp upstream
Tssr88944	transcription start site region 88944	701 bp upstream
Tssr88945	transcription start site region 88945	684 bp upstream
Tssr88946	transcription start site region 88946	588 bp upstream
Tssr88947	transcription start site region 88947	559 bp upstream
Tssr88948	transcription start site region 88948	529 bp upstream
Tssr88949	transcription start site region 88949	547 bp downstream