rs50916811 SNP Detail

Summary

• ID
  rs50916811
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113418327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC TCTGGAACTG GAGTTTCAGT
  S
  AGTTGTGAGC TGTAGGTGTT GGGAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss133564797	ENSMUSSNP5025972	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss321910878	CHEV_6_113391360	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50916811					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113418327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17844	CpG island 17844	1016 bp proximal
Gm43928	predicted gene, 43928	472 bp upstream
Jagn1	jagunal homolog 1	1203 bp upstream
Rr132170	regulatory region 132170	within coordinates
Rr145547	regulatory region 145547	673 bp proximal
Rr146999	regulatory region 146999	1328 bp distal
Rr399832	regulatory region 399832	978 bp upstream
Tssr58212	transcription start site region 58212	1205 bp upstream
Tssr58213	transcription start site region 58213	1262 bp upstream