rs50917372 SNP Detail

Summary

• ID
  rs50917372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5642455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTAATT AAAAAAAAAA
  AAACTAAAAC AAAAACCAAA AAACATTAGT GTGGTGAATT TCCAGAAGAC TACGGTAGCC
  CTTCAGATTT TGTCTTGAAA AGACTGATCC TAGATTAGCA GACAATGGGG AGTTGTAAAA
  GTACACTTAT TGTACTAACA GCTAAGACAG AAAATGTACT AGGAGATTCT GGTTTAGACA
  Y
  TATTGTTTTA CTCTTGTTCT GTGAACACAT CTCTTATTGG GTTTGGAGTA TAATATGATT
  TTATATTGAA AAGTAACACC CTCAATGAGA TCCTTTAATA CCATTAAAAC CCAGGGTTTT
  GTTGTTGTTG TTTTGTTTTG TTTTGAGACA GGGTTTCTCT GTGTAGCCCT GCTTGTTCTG
  GAACTCACTC CATAGACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145954963	ENSMUSSNP5601434	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50917372					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5642455 () rs orientation: forward

Symbol	Name	Function Class
4930423M02Rik	RIKEN cDNA 4930423M02 gene	171 bp downstream
Cpgi13998	CpG island 13998	1370 bp proximal
Fam110b	family with sequence similarity 110, member B	1554 bp upstream
Tssr36378	transcription start site region 36378	1629 bp upstream
Tssr36379	transcription start site region 36379	1678 bp upstream
Tssr36380	transcription start site region 36380	1761 bp upstream
Tssr36381	transcription start site region 36381	1813 bp upstream