rs50918999 SNP Detail

Summary

• ID
  rs50918999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:51370918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAGGGATC TGAGTTGAAG AGATCCTAGA GCTTCTGGCT
  AAGAATTGAC TCTGTTCTTC TAACATGACA GATGCTTCTG TGAAGAACAC ACAATCTGAG
  R
  ACAATGCAGA GCTGAACAGT TGGGTGAGAC TCCTGCCCCA TTCACACTGA TAAGAGCAAT
  ACTTTTCGCC AGTAAGAACC ACACATTGCC CCTCCATCTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52288596	NES15304590	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50918999					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52288596	NES15304590	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51370918 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm40645	predicted gene, 40645			within coordinates
Gm49339	predicted gene, 49339			Coding-NonSynonymous
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A			Coding-NonSynonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr93271	transcription start site region 93271			1963 bp downstream
Tssr93272	transcription start site region 93272			1908 bp downstream
Tssr93273	transcription start site region 93273			1637 bp downstream
Tssr93274	transcription start site region 93274			1104 bp downstream
Tssr93275	transcription start site region 93275			971 bp downstream
Tssr93276	transcription start site region 93276			917 bp downstream
Tssr93277	transcription start site region 93277			869 bp downstream
Tssr93278	transcription start site region 93278			833 bp downstream
Tssr93279	transcription start site region 93279			677 bp downstream
Tssr93280	transcription start site region 93280			230 bp downstream
Tssr93281	transcription start site region 93281			182 bp downstream
Tssr93282	transcription start site region 93282			164 bp downstream
Tssr93283	transcription start site region 93283			74 bp downstream
Tssr93284	transcription start site region 93284			234 bp upstream
Tssr93285	transcription start site region 93285			459 bp upstream
Tssr93286	transcription start site region 93286			573 bp upstream
Tssr93287	transcription start site region 93287			935 bp upstream
Tssr93288	transcription start site region 93288			1195 bp upstream
Tssr93289	transcription start site region 93289			1263 bp upstream
Tssr97556	transcription start site region 97556			311 bp upstream
Tssr97557	transcription start site region 97557			12 bp downstream
Tssr97558	transcription start site region 97558			1199 bp downstream
Tssr97559	transcription start site region 97559			1669 bp downstream
Tssr97560	transcription start site region 97560			1765 bp downstream