TTCCGGTTTC CTCAGTTTCC CTCTACTATC TTTTTCTGCT CCAAGGTCCC ACTCAGGGAA CACGTGGCAG GCAATCGACA CGTCCTCAGG CCCTCCCTGG AGGCGATGGC TTCTCATTGA TGACCTTGAC TGTACTGTTC CAGAATGTTC TGCACTGACA CATGCTGGCG TCCACTGTGT CCTTCCGAGT CCTCTGGTGT Y TTGGTTGTTG GGTAGAAAGA CCACACATGA GCACAATTTC ATTGCATGTA AGAAAGCACA TAGCCAGCCC AGCTCAGCAC TGGGCTATAG ACCTGGCTCT GCTGCTGAAG GTGTTTCTAG GTGCCTCAGC CTCCCTACTC ATGCTATTCT TAGCATCTTC TTTAGAAGAA AATGTCTCAG CACGAGCACA CTCCAAGTAG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss52376408 | NES15271938 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs50919084 | SNP | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss52376408 | NES15271938 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr10:76847489 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm3137 | predicted gene, 3137 | within coordinates | ||||||
Gm10787 | predicted gene 10787 | 340 bp upstream | ||||||
Rr434365 | regulatory region 434365 | 644 bp proximal | ||||||
Tssr94202 | transcription start site region 94202 | 329 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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