rs50919708 SNP Detail

Summary

• ID
  rs50919708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38703241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGAGTTT ACCACCGCTT
  GCTTGATCTG TGGACATTTG CCCTTCAGCT GTCGCTCTTG TAGTGCCAGG CCCCACGCTA
  CCCACATCAC CCTGTCTTGT AGGAGGATTG TTGTGCTTTG AATGGACAAC TCTGGGAAAT
  GCACATCTAA ACACGATGGC ATGTTTTGTA ATTTGTAACA TTTGAGTAAC AAGGAATCAC
  R
  TGTAGAAAAA AAAGCCCTTC GTTATACTAA TTGTTTTCTT TGGTCTCTAA AAAAATATAG
  CTGCTGTGTT ATTTGATATC GTGTGATGTG TGTTCCTGGA TATGAATACT AGAGTGTGTG
  TGTGCATTTG TGTGTGTGTG TGTGTATACA TAATGTTCCT TGTGTGAATA CACGAGCTAC
  ACGGATAGTG TTGTTAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60719313	NES16354851	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50919708					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60719313	NES16354851	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38703241 () rs orientation: forward

Symbol	Name	Function Class
Aff3	AF4/FMR2 family, member 3	within coordinates
Rr366875	regulatory region 366875	808 bp upstream
Rr409724	regulatory region 409724	1041 bp distal
Rr409725	regulatory region 409725	75 bp proximal
Rr409726	regulatory region 409726	785 bp proximal
Rr409727	regulatory region 409727	1383 bp proximal
Tssr11346	transcription start site region 11346	762 bp downstream
Tssr11347	transcription start site region 11347	774 bp downstream
Tssr11348	transcription start site region 11348	787 bp downstream
Tssr11349	transcription start site region 11349	845 bp downstream
Tssr11350	transcription start site region 11350	863 bp downstream
Tssr11351	transcription start site region 11351	1432 bp downstream