rs50919886 SNP Detail

Summary

• ID
  rs50919886
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45863532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTCGTA TTTGAAGTAC
  TGAGAACATA GGAAGGGAGA GTGTCATCTC AGGAGGGTGC TCTCTCTGCC CCTCCGAAGG
  GATCTGTCTC CTCCAAGGGA GGTTTCAGAA TCTTCTTGGC TCAGACAATG AAGCTACGAG
  GGGAGAAGAG CCTTGACCGT GAACATCCCA GTCCTGCATG TCCCTGAGCA CTGATATCCT
  K
  TGTGTCAGCT GGGCACATAG GATTGTGCCT GAGAGGCAGA GTAGGAAAGT CAGTGAGCAG
  ACCCTGTCAC TGCACTGTCC CTGCCTGTCT ATCCACACAG GAGCTCCGAG AGTCCCACCC
  TAGAGACAAA ATTAATTGCT AGTCCTAGCA ATTCTGTACC TACTCCTGCT CTCATATCCA
  AATCTCCCCC AATTTTCTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136420870	ENSMUSSNP2784472	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50919886					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45863532 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	1867 bp upstream
Gm68914	predicted gene, 68914	982 bp downstream
Rr678012	regulatory region 678012	1377 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr89292	transcription start site region 89292	625 bp downstream
Tssr89293	transcription start site region 89293	1439 bp downstream