rs50920022 SNP Detail

Summary

• ID
  rs50920022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29895451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCTTGCTC ATCCTTAAAC AACATCGACA AATACCTGCC
  GGTCCCTAAA TACTCTCCAC TCACTAGGTT GTGTGTCCTC GAAGCAGGCC TGTGGGATAG
  R
  TCTGTTATTG TCCCCATTCT ATGTATAAGT AAACTGAGGT TAAACAACCA GTCTGCTTTA
  CCTGTTCAAA GAATCTCCGA TAACTTAATA TGATAATCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148668777	ENSMUSSNP6115102	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322132217	CHEV_7_30981045	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50920022					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29895451 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18782	CpG island 18782	1985 bp distal
Cpgi18783	CpG island 18783	710 bp distal
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	611 bp upstream
Rr400233	regulatory region 400233	690 bp downstream
Tssr71703	transcription start site region 71703	1993 bp upstream
Tssr71704	transcription start site region 71704	1886 bp upstream
Tssr71705	transcription start site region 71705	1864 bp upstream
Tssr71706	transcription start site region 71706	995 bp upstream
Tssr71707	transcription start site region 71707	983 bp upstream
Tssr71708	transcription start site region 71708	936 bp upstream
Tssr71709	transcription start site region 71709	801 bp upstream
Tssr71710	transcription start site region 71710	457 bp upstream