rs50920180 SNP Detail

Summary

• ID
  rs50920180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90363010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATGACTA GCACAGAGCC
  ATTAGATGCT TAGGGTCTTC AGAGAAGGTG ATAATAGTTC TACCTTCCCC TTAGTAGCTA
  GGACCCCTCT CTAAAGGCTT CTCAGGCCTT CACTCTGAGG TACAATTGAT AGGAGAAAGT
  CGGGGTGCTT AAGACTGCAT CGGGTTCCTA TGAGTAGTTT CTGGCAACCT GTGACAATTA
  Y
  AGCATTTCAT GTACACATTT TAAATGTTTT AGAGACTTTG AAGGGAAATA TAATCATGGC
  TTCTGCAAGG TGTATAGATT TCATGGGTAA GAAAGAAAAT GTCTCTGCCA GGGTGAAGGA
  TTACTTTCTG CACTTACCTG TCTTTATTGA AAAACACTCT TGGAACCAAC CCTATGACCA
  GCCAGGAGAG GTTCCATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60907086	NES15949235	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50920180					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60907086	NES15949235	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90363010 () rs orientation: forward

Symbol	Name	Function Class
C030015A19Rik	RIKEN cDNA C030015A19 gene	779 bp upstream
Rr137432	regulatory region 137432	1191 bp proximal
Rr379740	regulatory region 379740	727 bp downstream
Tssr57645	transcription start site region 57645	1495 bp downstream
Zxdc	ZXD family zinc finger C	within coordinates