rs50920187 SNP Detail

Summary

• ID
  rs50920187
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121425698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGACCAAG ACAAAGAAAC TGATCAAGGC CCAAAGTTTA
  CTTAAGAGTC TGAGCTTATA AAGGGGGAAG GCCCATCCGC CACCATGCCA AGTTCTTGAT
  K
  CTTTGTCGCC AGGCTGTCAG CACTTGGTCA CCAGGCTGTT GCTTATTCAT GAAGGTCTCA
  GGAAGACAGG TTCAGCCTCT CGGCTGGTAG GCAGCATCTT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61239952	NES16854018	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50920187					SNP	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61239952	NES16854018	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121425698 () rs orientation: forward

Symbol	Name	Function Class
Gm57058	predicted gene, 57058	within coordinates
Lyzl4	lysozyme-like 4	within coordinates
Lyzl4os	lysozyme-like 4, opposite strand	within coordinates
Rr199243	regulatory region 199243	1698 bp distal
Rr199244	regulatory region 199244	1298 bp distal
Tssr92055	transcription start site region 92055	577 bp downstream