rs50920551 SNP Detail

Summary

• ID
  rs50920551
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:66268922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCTTGAT CATGTTTTGT
  GCAGGAACAC AAAGCCTGAC TAAGACACCC AATTAGGCCC AGCCGCAATC TTGTGTTAGA
  ACAATCACTT ACTTTACAGA GAGAAACTGA GCACCAAAGG GGCCAGTGAT ATGTGCAAAG
  TCGCTCTGAG CATATAAGAG AGGTAGGTCC TCTAGTGTAT TTACATCGTG CCATTTAGCT
  Y
  CAAAGAGCTA GTATTCCACA TGGAACTGCT GAAAAACCAA TATTGCTGGG AACCCCTTGC
  ACTTCAGATA TGGTACATAA CTGCACAGTA AACATCAGTC CACAGCTAGC CATAGTTAGG
  CCAGGCAAGA AGAAACAGAG AATTTAATTA TGTAACACCT ATTCAGATAT TGTATGAAAA
  CCATTTTCAT ATCTGACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss146716932	ENSMUSSNP5169457	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs50920551					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66268922 () rs orientation: forward

Symbol	Name	Function Class
Rr558183	regulatory region 558183	1809 bp proximal
Scn1a	sodium channel, voltage-gated, type I, alpha	Intron