rs50921785 SNP Detail

Summary

• ID
  rs50921785
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGACTCC CATTATTACC
  TGCACATTTG GTCTGTTTCT TTTAGTTGCC CCTTCAAATG CCAGGTAAGA CAAAGACGCT
  GGCTCACTCC CTCCAACATC AACTTTGAAT ATATCTCCAG ATTTAGCGAT CACTATGCCA
  ATCACGTGGT CCCCTTTCAC AGGTACATAC TAAAAGCAGA ATGAAAGAAC AGTCATAAAT
  R
  ATACAAATAT CATTACAAAA TATCTTCTGA AACTTTCATC TAGGTTGATC AGGGTGGGTC
  TCAACCTATC CAGCCAACTC ATACTCCCCA TGTAGCTGCA ACTACAAAAC CGGCCCGCAC
  CAGTCCAACT TTATGAACGT CTAATTCACA CTTGATCAAG TTTCAAGTTT TCTCAGCATC
  CTTTACAAGT CTGGTGGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146251746	ENSMUSSNP5793361	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50921785					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319731 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	301 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	628 bp upstream
Rr100958	regulatory region 100958	within coordinates
Tssr37060	transcription start site region 37060	642 bp upstream
Tssr37061	transcription start site region 37061	654 bp upstream
Tssr37062	transcription start site region 37062	687 bp upstream
Tssr41531	transcription start site region 41531	539 bp downstream
Tssr41532	transcription start site region 41532	645 bp downstream
Tssr41533	transcription start site region 41533	731 bp downstream
Tssr41534	transcription start site region 41534	849 bp downstream