rs50921982 SNP Detail

Summary

• ID
  rs50921982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32304458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGGAGTC ACCAAGAGGC TCACATCTCA GAAATAGTTA
  ATCATGGTGT AGGAGACAAA ATAAAACTGG CCTGAGCATT TTCCCTCCTA GAAGCACACA
  Y
  GGTCACTTTG CTCTCAATAG TTTGGGGGCC CAACGAATGA ACTCAGTTCC ACTTTCAAAA
  GCATTTCCGT ACTGGGAAGA CAAGGTTTCA GGTTTATCCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63736648	NES17074306	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50921982					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63736648	NES17074306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32304458 () rs orientation: forward

Symbol	Name	Function Class
Rr514710	regulatory region 514710	87 bp distal
Rr514711	regulatory region 514711	1492 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	1956 bp downstream
Tssr4847	transcription start site region 4847	1975 bp downstream
Tssr140806	transcription start site region 140806	528 bp downstream
Tssr140807	transcription start site region 140807	1512 bp downstream
Tssr140808	transcription start site region 140808	1528 bp downstream
Tssr140809	transcription start site region 140809	1555 bp downstream
Tssr140810	transcription start site region 140810	1585 bp downstream