rs50922058 SNP Detail

Summary

• ID
  rs50922058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30907898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGAG GACAGAGGGC CCACTCCCAC
  Y
  TTCCAAGCGA GCCGTGCTCT TCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60988992	NES16133963	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	C	C	C	C		C	C	C		T
ss148703253	ENSMUSSNP6532249	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss322140289	CHEV_7_31993492	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50922058					SNP	T	T	T	T	T	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60988992	NES16133963	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30907898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	within coordinates
Gm37292	predicted gene, 37292	within coordinates
Gm73020	predicted gene, 73020	within coordinates
Rr645057	regulatory region 645057	121 bp distal
Rr645058	regulatory region 645058	within coordinates
Rr645059	regulatory region 645059	34 bp proximal
Tssr65855	transcription start site region 65855	634 bp downstream
Tssr65856	transcription start site region 65856	110 bp downstream
Tssr65857	transcription start site region 65857	83 bp downstream