rs50923208 SNP Detail

Summary

• ID
  rs50923208
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87686673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG TTGTCCGTGT CAAGTGGCTG
  C
  GCCTATCAGG ACGTGAGGGT GACAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132512875	ENSMUSSNP2182446	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323773654	CHEV_11_87609349	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50923208					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87686673 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr370606	regulatory region 370606	1300 bp downstream
Rr453904	regulatory region 453904	304 bp proximal
Rr453905	regulatory region 453905	358 bp proximal
Tssr3631	transcription start site region 3631	1079 bp downstream
Tssr3632	transcription start site region 3632	579 bp downstream
Tssr3633	transcription start site region 3633	466 bp upstream
Tssr103983	transcription start site region 103983	2000 bp downstream
Tssr103984	transcription start site region 103984	1815 bp downstream
Tssr103985	transcription start site region 103985	1790 bp downstream
Tssr103986	transcription start site region 103986	1776 bp downstream
Tssr103987	transcription start site region 103987	1635 bp downstream
Tssr103988	transcription start site region 103988	1311 bp downstream
Tssr103989	transcription start site region 103989	1032 bp downstream
Tssr103990	transcription start site region 103990	620 bp downstream
Tssr103991	transcription start site region 103991	547 bp downstream
Tssr103992	transcription start site region 103992	529 bp downstream
Tssr103993	transcription start site region 103993	55 bp downstream
Tssr103994	transcription start site region 103994	8 bp upstream
Tssr103995	transcription start site region 103995	184 bp upstream
Tssr103996	transcription start site region 103996	236 bp upstream
Tssr103997	transcription start site region 103997	406 bp upstream
Tssr103998	transcription start site region 103998	513 bp upstream
Tssr103999	transcription start site region 103999	1469 bp upstream
Tssr104000	transcription start site region 104000	1581 bp upstream
Tssr104001	transcription start site region 104001	1611 bp upstream
Tssr104002	transcription start site region 104002	1637 bp upstream
Tssr104003	transcription start site region 104003	1710 bp upstream
Tssr104004	transcription start site region 104004	1736 bp upstream
Tssr104005	transcription start site region 104005	1760 bp upstream
Tssr109976	transcription start site region 109976	574 bp downstream
Tssr109977	transcription start site region 109977	1498 bp downstream
Tssr109978	transcription start site region 109978	1526 bp downstream
Tssr109979	transcription start site region 109979	1578 bp downstream
Tssr109980	transcription start site region 109980	1766 bp downstream