rs50923516 SNP Detail

Summary

• ID
  rs50923516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146355059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC AAGAACTGCA TAAAACATGC
  Y
  CCTCATCAAA ATCGCACATA CGGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136045647	ENSMUSSNP3230021	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321010806	CHEV_3_146312268	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50923516					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146355059 () rs orientation: forward

Symbol	Name	Function Class
4930503B20Rik	RIKEN cDNA 4930503B20 gene	within coordinates
Gm16325	predicted gene 16325	within coordinates
Samd13	sterile alpha motif domain containing 13	within coordinates
Tssr36049	transcription start site region 36049	992 bp upstream
Tssr36050	transcription start site region 36050	1987 bp downstream
Tssr36051	transcription start site region 36051	2000 bp downstream