rs50925847 SNP Detail

Summary

• ID
  rs50925847
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:37919184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCTGAGAA GATGCCAGTT CTAGCTTCAG GAAGCTGCTC
  CTTCCTCACC TGAGAACCTG CCTGGCCCTG TGCCCTCTGC CCAAACAGGA GAAGCAGCCT
  S
  AACTAGTTTG TGTGGCTGAC AGAGGCCATG GAGGGAAAGG GCTTCCCAAT GCCCCCTAGC
  CTGTCACTGC CATGCAGAAA GGGTCACAGG CAGCTCCTGG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60996230	NES16131784	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50925847					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60996230	NES16131784	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:37919184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18905	CpG island 18905	1696 bp proximal
Plekhf1	pleckstrin homology domain containing, family F (with FYVE domain) member 1	894 bp downstream
Rr645765	regulatory region 645765	1558 bp distal