rs50927417 SNP Detail

Summary

• ID
  rs50927417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52818541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGCCTG ATGGTCTTCT
  GCTGGTTCCT TCTGCACAGG TGTGAGCAGA GGCGAGCAGG TGGAGCAGCG CCCTCCTCAC
  CTGAGTGTCC GGGAGGGAGA CAGCGCCATT ATCATCTGCA CCTACACAGA CAGTGCCACT
  GCTTACTTCT CCTGGTACAA GCAAGAGGCG GGGGCAGGTC TTCAGTTGCT TATGAGTGTC
  Y
  TTTCAAATGT GGACAGAAAA GAAGAACAAG GACTCACTGT CTTACTGAAC AAGAAAGACA
  AACGACTCTC TCTGAACCTC ACAGCTGCCC ATCCTGGGGA CTCAGCCGTG TACTTCTGCG
  CAGTCAGTGC ACAGTGCCCC CCAGGCACCT GCAGTCTGCA CAAAAACCTG AGAATGGAGA
  CAGGGGGCAC AACTTTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62391667	NES17240025	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50927417					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62391667	NES17240025	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52818541 () rs orientation: forward

Symbol	Name	Function Class
Rr491934	regulatory region 491934	465 bp distal
Rr491935	regulatory region 491935	556 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Trav3-1	T cell receptor alpha variable 3-1	within coordinates
Tssr125465	transcription start site region 125465	494 bp downstream