rs50927594 SNP Detail

Summary

• ID
  rs50927594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51361266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAGATGAG ATTTAAAGAA AGAGTGAGGA ATCACAAAGT
  GTTGAGGAAA AGTGTGTTTT AAACAGATAT GAAAAAATAA CTAAAGTTAC GAAATAACTC
  R
  GAATAGTAGG CGTATTCACA AAGCTGTGTG GCTGCATCCC TACAGGTGAC AGCTGAGATC
  ATCTCTTCCC TCTGGCTCTT CATAGGACTG TGAACAAAGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52289010	NES15304952	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50927594					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52289010	NES15304952	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51361266 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	within coordinates
Tssr93245	transcription start site region 93245	1750 bp downstream
Tssr93246	transcription start site region 93246	1565 bp downstream
Tssr93247	transcription start site region 93247	1522 bp downstream
Tssr93248	transcription start site region 93248	1481 bp downstream
Tssr93249	transcription start site region 93249	1315 bp downstream
Tssr93250	transcription start site region 93250	854 bp downstream
Tssr93251	transcription start site region 93251	793 bp downstream
Tssr93252	transcription start site region 93252	698 bp downstream
Tssr93253	transcription start site region 93253	502 bp downstream
Tssr93254	transcription start site region 93254	369 bp downstream
Tssr93255	transcription start site region 93255	151 bp downstream
Tssr93256	transcription start site region 93256	48 bp downstream
Tssr93257	transcription start site region 93257	305 bp upstream
Tssr93258	transcription start site region 93258	540 bp upstream
Tssr93259	transcription start site region 93259	582 bp upstream
Tssr97554	transcription start site region 97554	579 bp downstream
Tssr97555	transcription start site region 97555	1141 bp downstream