rs50927963 SNP Detail

Summary

• ID
  rs50927963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29892591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC CAGGAACACC CACCAATCAC
  R
  ATGTCAGAAG CATCTTAGCC CCAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148668607	ENSMUSSNP5671616	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322132183	CHEV_7_30978185	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50927963					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29892591 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	137 bp distal
Cpgi18782	CpG island 18782	621 bp proximal
Cpgi18783	CpG island 18783	1313 bp proximal
Gm26810	predicted gene, 26810	within coordinates
Rr400232	regulatory region 400232	438 bp upstream
Rr400233	regulatory region 400233	1869 bp upstream
Rr644738	regulatory region 644738	within coordinates
Rr644739	regulatory region 644739	1872 bp proximal
Tssr65662	transcription start site region 65662	763 bp upstream
Tssr71696	transcription start site region 71696	236 bp upstream
Tssr71697	transcription start site region 71697	215 bp upstream
Tssr71698	transcription start site region 71698	184 bp upstream
Tssr71699	transcription start site region 71699	58 bp upstream
Tssr71700	transcription start site region 71700	23 bp upstream
Tssr71701	transcription start site region 71701	172 bp downstream
Tssr71702	transcription start site region 71702	628 bp downstream
Tssr71703	transcription start site region 71703	834 bp downstream
Tssr71704	transcription start site region 71704	928 bp downstream
Tssr71705	transcription start site region 71705	986 bp downstream
Tssr71706	transcription start site region 71706	1854 bp downstream
Tssr71707	transcription start site region 71707	1866 bp downstream
Tssr71708	transcription start site region 71708	1880 bp downstream