rs50928930 SNP Detail

Summary

• ID
  rs50928930
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAAGTGG ACACATTTAT
  TTATTCATGT ATTTTTACAA ATAACAAAAA ATAAAAACGT CTGTTAAAAA AAAAATCCCG
  TGCTTAAGTT TGTTTTATAT ATCTCAATAT TTTATTCTTC CATCGTATTG AAGGTGTCAG
  GAATGCTTAA GAAACCATGT TTCCTGCAGC AACAGCTACT AGCTGGAGTC TCCCTTGTTT
  Y
  TGTCAAGAAG GCACACTTGA TGCCTTTCAA AGTCTCTGCA GGATTTTTCT GTCAGAGAAT
  CCCTCTCTAA CATATTCTTT CCCCCAAGGA ACAGCTTGAG GTTCATTGCT AATCTGAGGA
  ATTTTTAAAA AGTGTTTTTA AAGCTTTCAT TTAAATTATT TTTCCTAAAC TTTTTATTTA
  TTTGTGTGTG TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198237	NES16702761	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50928930					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198237	NES16702761	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053933 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	136 bp downstream
Tssr47227	transcription start site region 47227	2000 bp downstream
Tssr47228	transcription start site region 47228	1937 bp downstream
Tssr47229	transcription start site region 47229	1916 bp downstream
Tssr47230	transcription start site region 47230	1891 bp downstream
Tssr47231	transcription start site region 47231	1861 bp downstream
Tssr47232	transcription start site region 47232	1714 bp downstream
Tssr47233	transcription start site region 47233	1664 bp downstream
Tssr47234	transcription start site region 47234	1629 bp downstream
Tssr47235	transcription start site region 47235	871 bp downstream
Tssr47236	transcription start site region 47236	832 bp downstream
Tssr47237	transcription start site region 47237	812 bp downstream
Tssr47238	transcription start site region 47238	753 bp downstream
Tssr47239	transcription start site region 47239	748 bp downstream
Tssr47240	transcription start site region 47240	729 bp downstream
Tssr47241	transcription start site region 47241	700 bp downstream
Tssr47242	transcription start site region 47242	675 bp downstream
Tssr47243	transcription start site region 47243	657 bp downstream
Tssr47244	transcription start site region 47244	618 bp downstream
Tssr47245	transcription start site region 47245	601 bp downstream
Tssr47246	transcription start site region 47246	547 bp downstream
Tssr47247	transcription start site region 47247	493 bp downstream
Tssr47248	transcription start site region 47248	434 bp downstream
Tssr47249	transcription start site region 47249	373 bp downstream
Tssr47250	transcription start site region 47250	235 bp downstream
Tssr47251	transcription start site region 47251	170 bp downstream
Tssr47252	transcription start site region 47252	118 bp downstream
Tssr51812	transcription start site region 51812	1847 bp upstream
Tssr51813	transcription start site region 51813	1830 bp upstream
Tssr51814	transcription start site region 51814	856 bp upstream
Tssr51815	transcription start site region 51815	810 bp upstream
Tssr51816	transcription start site region 51816	777 bp upstream